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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
ChIP-seq
100
ATAC-seq
1
Hi-C
1
pCHi-C
Assay category
Transcription
109
DNA binding
100
DNA accessibility
1
3D chromatin structure
Target of assay
42
transcription factor
34
histone
34
histone modification
31
control
30
narrow histone mark
8
RNA binding protein
8
chromatin remodeller
4
broad histone mark
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
48
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
154
bam
123
bigWig
78
bed narrowPeak
60
fastq
51
bigBed narrowPeak
50
tagAlign
1
tsv
Organism
211
Homo sapiens
Biosample type
100
primary cell
64
tissue
47
cell line
Organ
52
liver
45
blood
45
bodily fluid
14
spleen
Project
211
AMP
Genome assembly (visualization)
123
hg19
70
GRCh38
Lab
211
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
inconsistent control
assay_slims!
Transcription
organ_slims!
esophagus
BIOSAMPLE
ASSAY
211 results
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ChIP-seq
ATAC-seq
Hi-C
pCHi-C
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
macrophage
11
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 23 more…
tissue
liver
50
spleen
14
cell line
GM12878
45
HepG2
1
1
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