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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
340
ChIP-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
2
FAIRE-seq
Assay category
340
DNA binding
Transcription
27
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
244
transcription factor
88
histone
88
histone modification
71
control
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
340
November, 2017
322
August, 2017
277
October, 2019
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
80
April, 2019
74
October, 2018
71
November, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
343
bam
288
bigWig
258
fastq
254
bed narrowPeak
248
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
3
tar
Organism
383
Homo sapiens
Biosample type
249
cell line
112
tissue
22
primary cell
Organ
252
liver
98
brain
14
epithelium
14
heart
13
vasculature
9
blood vessel
6
musculature of body
5
kidney
5
limb
2
connective tissue
2
pancreas
1
artery
1
eye
1
pericardium
Project
383
AMP
Genome assembly (visualization)
242
hg19
228
GRCh38
Lab
383
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
20
inconsistent control read length
4
inconsistent control run_type
assay_slims!
Transcription
month_released!
June, 2019
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
383 results
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Clear Filters
ChIP-seq
RRBS
WGBS
Hi-C
ATAC-seq
FAIRE-seq
cell line
HepG2
249
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 19 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
brain pericyte
1
cardiac fibroblast
1
+ See 8 more…
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