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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
105
ChIP-seq
4
ATAC-seq
1
Hi-C
Assay category
191
DNA accessibility
105
DNA binding
Transcription
1
3D chromatin structure
Target of assay
49
histone
49
histone modification
37
control
27
broad histone mark
22
narrow histone mark
19
transcription factor
15
RNA binding protein
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
August, 2018
1
August, 2022
1
March, 2023
Available data
293
bam
255
bed narrowPeak
255
bigBed narrowPeak
255
bigWig
188
bed broadPeak
187
bed bed3+
187
bigBed broadPeak
59
fastq
1
bedpe
1
hic
Organism
297
Homo sapiens
Biosample type
242
tissue
55
primary cell
Organ
81
kidney
60
pancreas
43
musculature of body
41
connective tissue
35
heart
32
limb
30
brain
24
adipose tissue
20
epithelium
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
2
liver
Project
297
AMP
Genome assembly (visualization)
257
GRCh38
235
hg19
Lab
292
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
26
inconsistent ontology term
Audit category:
1
inconsistent control read length
assay_slims!
Transcription
month_released!
August, 2018
BIOSAMPLE
ASSAY
297 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Hi-C
tissue
body of pancreas
2
33
heart
18
muscle of arm
17
endocrine pancreas
16
kidney
13
+ See 37 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 17 more…
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