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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
DNase-seq
12
ChIP-seq
3
ATAC-seq
Assay category
158
DNA accessibility
Transcription
12
DNA binding
Target of assay
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
318
November, 2017
167
June, 2019
146
February, 2021
140
May, 2022
124
August, 2017
124
May, 2020
119
August, 2021
111
February, 2023
87
November, 2018
77
May, 2021
66
October, 2019
63
December, 2017
46
March, 2020
44
October, 2018
38
July, 2019
35
December, 2018
31
November, 2019
27
May, 2019
20
April, 2019
18
January, 2019
16
January, 2021
14
September, 2018
12
November, 2020
11
May, 2023
11
October, 2017
11
September, 2017
10
April, 2020
8
February, 2018
8
January, 2018
7
August, 2020
5
March, 2019
5
May, 2024
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
167
bam
162
bigWig
159
bed narrowPeak
159
bigBed narrowPeak
155
bed bed3+
155
bed broadPeak
155
bigBed broadPeak
3
fastq
Organism
170
Homo sapiens
Biosample type
131
tissue
39
primary cell
Organ
80
kidney
35
musculature of body
33
heart
limb
30
brain
21
epithelium
18
ureter
10
connective tissue
7
pancreas
7
vasculature
6
eye
5
blood vessel
2
artery
2
liver
1
adipose tissue
Project
167
AMP
3
HPAP
Genome assembly (visualization)
162
GRCh38
136
hg19
Lab
167
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
9
inconsistent ontology term
assay_slims!
Transcription
organ_slims!
limb
target.investigated_as!
histone
BIOSAMPLE
ASSAY
170 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
kidney
13
brain
12
renal cortex interstitium
11
renal pelvis
10
+ See 30 more…
primary cell
cardiac fibroblast
3
3
cardiac muscle cell
1
2
epithelial cell of proximal tubule
1
2
retinal pigment epithelial cell
1
2
glomerular visceral epithelial cell
2
+ See 19 more…
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