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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ATAC-seq
50
ChIP-seq
3
Hi-C
1
MPRA
1
pCHi-C
Assay category
Transcription
100
DNA accessibility
50
DNA binding
3
3D chromatin structure
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
August, 2022
1
March, 2023
Available data
95
bam
72
bigWig
50
tagAlign
27
bed narrowPeak
3
bedpe bed3+
3
cool
3
hic
1
tsv
1
txt
Organism
154
Homo sapiens
Biosample type
103
primary cell
50
tissue
2
cell line
Organ
51
liver
3
epithelium
3
pancreas
Project
152
AMP
3
HPAP
Genome assembly (visualization)
75
hg19
19
GRCh38
Lab
152
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
3
audit script error
assay_slims!
Transcription
month_released!
August, 2022
BIOSAMPLE
ASSAY
155 results
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ATAC-seq
ChIP-seq
Hi-C
MPRA
pCHi-C
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
macrophage
11
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 26 more…
tissue
liver
50
cell line
HepG2
1
MIN6
1
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