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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
10
MeRIP-seq
4
ATAC-seq
1
DNase-seq
Assay category
74
DNA binding
Transcription
5
DNA accessibility
Target of assay
34
control
30
histone
30
histone modification
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
5
nucleotide modification
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
76
bam
61
fastq
49
bigWig
47
bed narrowPeak
46
bigBed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
89
Homo sapiens
Biosample type
78
tissue
6
cell line
5
primary cell
Organ
64
pancreas
25
connective tissue
23
adipose tissue
9
epithelium
Project
86
AMP
3
HPAP
Genome assembly (visualization)
50
GRCh38
47
hg19
Lab
76
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
Audit category:
1
inconsistent control read length
assay_slims!
Transcription
BIOSAMPLE
ASSAY
89 results
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Clear Filters
ChIP-seq
MeRIP-seq
ATAC-seq
DNase-seq
tissue
body of pancreas
33
endocrine pancreas
16
subcutaneous adipose tissue
12
omental fat pad
11
islet of Langerhans
4
+ See 1 more…
cell line
EndoC_BH1
6
primary cell
osteoblast
1
1
pancreatic alpha cell
2
pancreatic beta cell
1
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