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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ATAC-seq
10
MeRIP-seq
1
DNase-seq
Assay category
Transcription
16
DNA accessibility
Target of assay
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
5
control
5
nucleotide modification
Date released
318
November, 2017
199
June, 2019
152
February, 2021
140
May, 2022
124
August, 2017
124
May, 2020
119
August, 2021
111
February, 2023
88
October, 2019
87
November, 2018
77
May, 2021
63
December, 2017
46
March, 2020
44
October, 2018
43
July, 2019
35
December, 2018
31
November, 2019
28
May, 2019
20
April, 2019
18
January, 2019
16
January, 2021
14
September, 2018
12
November, 2020
11
May, 2023
11
October, 2017
11
September, 2017
10
April, 2020
8
February, 2018
8
January, 2018
7
August, 2020
March, 2019
5
May, 2024
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
16
bam
16
bed narrowPeak
15
bigBed narrowPeak
15
bigWig
14
fastq
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
26
Homo sapiens
Biosample type
16
primary cell
6
cell line
4
tissue
Organ
24
pancreas
20
epithelium
2
connective tissue
Project
26
AMP
Genome assembly (visualization)
16
GRCh38
16
hg19
Lab
16
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
assay_slims!
Transcription
month_released!
March, 2019
target.investigated_as!
histone
BIOSAMPLE
ASSAY
26 results
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ATAC-seq
MeRIP-seq
DNase-seq
primary cell
pancreatic beta cell
4
pancreatic ductal cell
4
pancreatic acinar cell
3
pancreatic alpha cell
3
osteoblast
1
1
cell line
EndoC_BH1
6
tissue
islet of Langerhans
4
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