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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1653ChIP-seq
  • 379ATAC-seq
  • 204DNase-seq
  • 87RNA microarray
  • 74snATAC-seq
  • 56pCHi-C
  • 25Hi-C
  • 24WGBS
  • 19RRBS
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2HiChIP
  • 1DNAme array
  • 1MPRA
  • 1whole genome sequencing assay
Assay category
  • 1653DNA binding
  • Transcription
  • 660DNA accessibility
  • 44DNA methylation
  • 253D chromatin structure
  • 1DNA sequencing
Target of assay
  • 866histone modification
  • 865histone
  • 495transcription factor
  • 441narrow histone mark
  • 423broad histone mark
  • 287control
  • 105RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 266October, 2019
  • 223August, 2017
  • 214June, 2019
  • 197May, 2021
  • 151May, 2020
  • 146February, 2021
  • 136August, 2021
  • 118May, 2019
  • 97February, 2023
  • 94December, 2017
  • 80April, 2019
  • 80November, 2018
  • 42May, 2022
  • 41July, 2019
  • 40March, 2020
  • 40May, 2024
  • 35December, 2018
  • 25January, 2019
  • 24February, 2018
  • 23October, 2018
  • 18October, 2017
  • 11May, 2023
  • 10April, 2020
  • 8January, 2018
  • 8January, 2021
  • 6November, 2019
  • 2December, 2019
  • 2November, 2020
  • 1August, 2018
  • 1July, 2025
  • 1March, 2023
  • 1October, 2022
Available data
  • 1709bam
  • 1603bed narrowPeak
  • 1550bigWig
  • 951bigBed narrowPeak
  • 769fastq
  • 379tagAlign
  • 301bed broadPeak
  • 278bigBed broadPeak
  • 243bed bed3+
  • 89txt
  • 64xls
  • 48tsv
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 21zippedFastqFolder
  • 16bedpe bed3+
  • 16hic
  • 12bed bed3
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 2543Homo sapiens
Biosample type
  • 1337tissue
  • 488cell line
  • 461primary cell
  • 253in vitro differentiated cells
  • 8stem cell
Organ
  • 598liver
  • pancreas
  • 323epithelium
  • 262brain
  • 229kidney
  • 227heart
  • 203connective tissue
  • 169vasculature
  • 163blood vessel
  • 115limb
  • 97bone element
  • 90adipose tissue
  • 88musculature of body
  • 83artery
  • 69blood
  • 69bodily fluid
  • 42eye
  • 38nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 12skeleton
  • 11lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 2374AMP
  • 114T1D
  • 48HPAP
  • 10LungMap
  • 1ITG
Genome assembly (visualization)
  • 1558hg19
  • 1498GRCh38
  • 5hg18
Lab
  • 2124AMP-T2D consortium
  • 189Kyle Gaulton, UCSD
  • 82Katalin Susztak, Upenn
  • 48Klaus Kaestner, Upenn
  • 40Patrick T. Ellinor, Broad
  • 25Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 10Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 1ITG
  • 1Stephen Parker, UMich
Audit category:
  • 171inconsistent ontology term
  • 31audit script error
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 35missing controlled_by
Audit category:
  • 47inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
assay_slims!
  • Transcription
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

2547 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
WGBS
RRBS
GRO-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
snDrop-seq
Capture-C
HiChIP
DNAme array
MPRA
whole genome sequencing assay
tissue
liver1452021131
kidney2775136111
bone element84
heart left ventricle35231141
coronary artery5362
cell line
HepG2378122121
GM12878601
smooth muscle cell of the coronary artery68
EndoC_BH132
RCC 7860 HIF1a re-expression4
primary cell
monocyte851511
Langerhans cell48
CD8-positive, alpha-beta T cell3321
naive thymus-derived CD4-positive, alpha-beta T cell2221
CD4-positive, alpha-beta memory T cell22
in vitro differentiated cells
adipocyte67811
embryonic stem cell4061
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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