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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
7
ATAC-seq
6
WGBS
4
pCHi-C
2
DNase-seq
1
RNA microarray
Assay category
Transcription
74
DNA binding
9
DNA accessibility
6
DNA methylation
Target of assay
33
histone
33
histone modification
24
control
20
broad histone mark
17
transcription factor
13
narrow histone mark
5
RNA binding protein
Date released
57
August, 2017
23
October, 2018
3
March, 2020
3
October, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
November, 2018
1
November, 2019
1
October, 2017
Available data
45
bam
44
fastq
28
bigWig
14
bed narrowPeak
10
bigBed narrowPeak
9
tagAlign
6
bed bed3+
3
bed broadPeak
3
tsv
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
93
Homo sapiens
Biosample type
93
tissue
1
in vitro differentiated cells
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
227
heart
203
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
94
AMP
Genome assembly (visualization)
28
hg19
26
GRCh38
Lab
94
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
Transcription
BIOSAMPLE
ASSAY
94 results
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ChIP-seq
ATAC-seq
WGBS
pCHi-C
DNase-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
adipose tissue
2
3
3
1
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in vitro differentiated cells
white fat cell
1
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