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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 73ChIP-seq
  • 6ATAC-seq
  • 6WGBS
  • 2DNase-seq
  • 2pCHi-C
  • 1RNA microarray
Assay category
  • Transcription
  • 73DNA binding
  • 8DNA accessibility
  • 6DNA methylation
Target of assay
  • 32histone
  • 32histone modification
  • 24control
  • 20broad histone mark
  • 17transcription factor
  • 12narrow histone mark
  • 5RNA binding protein
Date released
  • 57August, 2017
  • 23October, 2018
  • 1August, 2018
  • 1August, 2021
  • 1February, 2023
  • 1January, 2018
  • 1June, 2019
  • 1March, 2020
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
  • 1October, 2019
Available data
  • 44bam
  • 44fastq
  • 27bigWig
  • 13bed narrowPeak
  • 10bigBed narrowPeak
  • 8tagAlign
  • 6bed bed3+
  • 3bed broadPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2bigBed broadPeak
  • 1bedpe bed3+
  • 1tsv
Organism
  • 89Homo sapiens
Biosample type
  • 89tissue
  • 1in vitro differentiated cells
Organ
  • 598liver
  • 467pancreas
  • 323epithelium
  • 262brain
  • 229kidney
  • 227heart
  • 203connective tissue
  • 169vasculature
  • 163blood vessel
  • 115limb
  • 97bone element
  • 90adipose tissue
  • 87musculature of body
  • 83artery
  • 69blood
  • 69bodily fluid
  • 42eye
  • 38nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 12skeleton
  • 11lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 90AMP
Genome assembly (visualization)
  • 27hg19
  • 25GRCh38
Lab
  • 90AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 12missing controlled_by
assay_slims!
  • Transcription
BIOSAMPLE
ASSAY

90 results

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Clear Filters
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue363
omental fat pad1112
subcutaneous adipose tissue1211
white adipose tissue12
adipose tissue2331
in vitro differentiated cells
white fat cell1
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