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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ChIP-seq
31
DNase-seq
4
ATAC-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
215
DNA binding
36
DNA accessibility
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
186
histone
186
histone modification
116
narrow histone mark
70
broad histone mark
27
control
2
RNA binding protein
2
transcription factor
Date released
88
November, 2017
85
October, 2019
29
June, 2019
28
May, 2019
16
October, 2017
6
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
227
bam
205
bigWig
200
bed narrowPeak
124
bigBed narrowPeak
118
tagAlign
44
bed broadPeak
35
bigBed broadPeak
33
bed bed3+
18
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
257
Homo sapiens
Biosample type
244
tissue
13
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
227
heart
203
connective tissue
169
vasculature
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
257
AMP
Genome assembly (visualization)
202
GRCh38
147
hg19
Lab
257
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
Transcription
organ_slims!
blood vessel
bodily fluid
BIOSAMPLE
ASSAY
257 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
+ See 73 more…
primary cell
astrocyte of the cerebellum
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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