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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
32
DNase-seq
6
pCHi-C
4
ATAC-seq
3
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
190
DNA binding
37
DNA accessibility
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
control
3
RNA binding protein
3
transcription factor
Date released
78
October, 2019
76
November, 2017
30
June, 2019
25
May, 2019
13
October, 2017
7
July, 2019
5
March, 2020
2
November, 2018
1
February, 2023
1
May, 2021
Available data
207
bigWig
204
bam
203
bed narrowPeak
127
bigBed narrowPeak
99
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
16
fastq
5
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
238
Homo sapiens
Biosample type
223
tissue
15
primary cell
Organ
490
liver
414
pancreas
293
epithelium
234
brain
217
kidney
207
heart
168
connective tissue
147
vasculature
142
blood vessel
98
limb
97
bone element
81
musculature of body
74
artery
66
adipose tissue
63
blood
63
bodily fluid
41
eye
27
nerve
20
vein
18
ureter
17
spleen
16
embryo
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
237
AMP
1
T1D
Genome assembly (visualization)
205
GRCh38
149
hg19
Lab
237
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
Transcription
target.investigated_as!
control
BIOSAMPLE
ASSAY
238 results
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ChIP-seq
DNase-seq
pCHi-C
ATAC-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain
17
14
1
1
layer of hippocampus
20
angular gyrus
14
caudate nucleus
13
1
substantia nigra
14
+ See 76 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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