Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
238
ChIP-seq
33
DNase-seq
5
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
2
WGBS
1
FAIRE-seq
Assay category
238
DNA binding
39
DNA accessibility
Transcription
4
DNA methylation
3
3D chromatin structure
Target of assay
193
histone
193
histone modification
119
narrow histone mark
74
broad histone mark
36
control
9
transcription factor
3
RNA binding protein
3
other context
3
other post-translational modification
Date released
91
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
17
October, 2017
11
November, 2018
7
December, 2018
7
January, 2019
7
July, 2019
3
March, 2020
1
February, 2023
Available data
255
bam
226
bigWig
217
bed narrowPeak
140
bigBed narrowPeak
118
tagAlign
48
bed broadPeak
45
fastq
39
bigBed broadPeak
36
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
hdf5
3
tsv
1
bed bed3
1
tagAlign bed3+
Organism
287
Homo sapiens
Biosample type
269
tissue
18
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
227
heart
203
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
urinary bladder
Project
287
AMP
Genome assembly (visualization)
221
GRCh38
166
hg19
Lab
287
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
Transcription
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
287 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
pCHi-C
RRBS
WGBS
FAIRE-seq
tissue
brain
20
14
1
1
spleen
20
1
1
1
2
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
+ See 74 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
Download