Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
67
DNase-seq
56
ATAC-seq
11
WGBS
7
Hi-C
4
pCHi-C
2
RRBS
Assay category
220
DNA binding
Transcription
123
DNA accessibility
13
DNA methylation
7
3D chromatin structure
Target of assay
152
histone
152
histone modification
95
broad histone mark
57
narrow histone mark
45
control
23
transcription factor
11
RNA binding protein
3
other context
3
other post-translational modification
Date released
71
October, 2019
67
June, 2019
57
April, 2019
40
May, 2024
35
February, 2023
28
May, 2019
20
February, 2021
19
July, 2019
9
November, 2018
7
December, 2018
7
January, 2019
6
March, 2020
1
October, 2017
Available data
297
bed narrowPeak
275
bam
257
bigWig
191
bigBed narrowPeak
67
bed bed3+
67
bed broadPeak
67
bigBed broadPeak
24
fastq
11
bed bedMethyl
11
bigBed bedMethyl
6
tagAlign
4
tsv
3
bedpe bed3+
3
hic
Organism
367
Homo sapiens
Biosample type
344
tissue
14
cell line
9
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
227
heart
203
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
367
AMP
Genome assembly (visualization)
304
GRCh38
224
hg19
Lab
327
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
7
inconsistent ontology term
assay_slims!
Transcription
BIOSAMPLE
ASSAY
367 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
RRBS
tissue
heart left ventricle
35
3
2
4
1
1
1
coronary artery
5
2
36
left cardiac atrium
40
1
tibial nerve
35
2
1
heart
14
18
1
1
+ See 17 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
See all biosamples
Download