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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 81DNase-seq
  • 75ATAC-seq
  • 52ChIP-seq
  • 6snATAC-seq
  • 4RRBS
  • 3snDrop-seq
  • 2RNA microarray
  • 2STARR-seq
  • 2pCHi-C
  • 1FAIRE-seq
  • 1Hi-C
Assay category
  • 163DNA accessibility
  • Transcription
  • 52DNA binding
  • 4DNA methylation
  • 13D chromatin structure
Target of assay
  • 30histone
  • 30histone modification
  • 15broad histone mark
  • 15narrow histone mark
  • 12control
  • 10transcription factor
  • 7recombinant protein
  • 3RNA binding protein
Date released
  • 81June, 2019
  • 73August, 2021
  • 24October, 2019
  • 23April, 2019
  • 11May, 2023
  • 5July, 2019
  • 5May, 2019
  • 3February, 2021
  • 2December, 2019
  • 2March, 2020
Available data
  • 183bed narrowPeak
  • 132bam
  • 119bigWig
  • 104bigBed narrowPeak
  • 78bed bed3+
  • 78bed broadPeak
  • 78bigBed broadPeak
  • 64xls
  • 7tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1hic
Organism
  • 229Homo sapiens
Biosample type
  • 184tissue
  • 30primary cell
  • 15cell line
Organ
  • 598liver
  • 467pancreas
  • 323epithelium
  • 262brain
  • 229kidney
  • 227heart
  • 203connective tissue
  • 169vasculature
  • 163blood vessel
  • 115limb
  • 97bone element
  • 90adipose tissue
  • 87musculature of body
  • 83artery
  • 69blood
  • 69bodily fluid
  • 42eye
  • 38nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 12skeleton
  • 11lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 229AMP
Genome assembly (visualization)
  • 193GRCh38
  • 117hg19
Lab
  • 145AMP-T2D consortium
  • 82Katalin Susztak, Upenn
  • 2Bing Ren, UCSD
Audit category:
  • 20inconsistent ontology term
  • 2audit script error
assay_slims!
  • Transcription
BIOSAMPLE
ASSAY

229 results

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Clear Filters
DNase-seq
ATAC-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
tissue
kidney1375276111
renal cortex interstitium11
renal pelvis10
right kidney10
left kidney9
primary cell
epithelial cell of proximal tubule1101
kidney epithelial cell151
kidney tubule cell3
glomerular visceral epithelial cell2
kidney glomerular epithelial cell2
cell line
RCC 7860 HIF1a re-expression4
RCC 7860 vector31
RCC 7860 HIF2a over-expression3
HEK293T2
RCC 7860 VHL1
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