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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
DNase-seq
19
ChIP-seq
8
ATAC-seq
6
Hi-C
1
FAIRE-seq
1
WGBS
Assay category
47
DNA accessibility
19
DNA binding
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
histone
64
histone modification
43
broad histone mark
21
narrow histone mark
19
control
Date released
32
June, 2019
28
October, 2019
6
February, 2021
5
July, 2019
1
March, 2020
1
May, 2019
Available data
67
bam
47
bed narrowPeak
42
bigWig
39
bigBed narrowPeak
38
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
73
Homo sapiens
Biosample type
66
tissue
7
primary cell
Organ
496
liver
316
pancreas
230
epithelium
199
kidney
130
heart
125
connective tissue
98
vasculature
97
bone element
93
blood vessel
75
brain
68
blood
68
bodily fluid
66
limb
63
artery
58
adipose tissue
54
musculature of body
39
eye
19
spleen
18
ureter
14
nerve
12
skeleton
11
embryo
11
lung
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
73
AMP
Genome assembly (visualization)
49
hg19
47
GRCh38
Lab
73
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
Transcription
organ_slims!
gonad
target.investigated_as!
histone
BIOSAMPLE
ASSAY
73 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
FAIRE-seq
WGBS
tissue
muscle of arm
17
muscle of leg
13
1
1
tibial nerve
2
11
1
tibial artery
2
5
1
gastrocnemius medialis
4
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primary cell
endothelial cell of umbilical vein
2
2
2
1
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