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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
RNA microarray
10
MeRIP-seq
7
ChIP-seq
5
STARR-seq
3
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
snATAC-seq
Assay category
Transcription
7
DNA binding
1
DNA accessibility
Target of assay
6
control
6
histone
6
histone modification
5
nucleotide modification
4
broad histone mark
2
narrow histone mark
Date released
87
February, 2021
10
November, 2020
7
August, 2017
6
August, 2021
2
December, 2019
1
April, 2020
1
February, 2023
1
October, 2022
Available data
85
txt
7
bam
7
fastq
7
tagAlign
6
bed broadPeak
6
bed narrowPeak
6
bigBed narrowPeak
6
bigWig
5
tsv
Organism
104
Homo sapiens
Biosample type
102
tissue
13
cell line
Organ
84
bone element
18
pancreas
8
epithelium
7
kidney
2
liver
1
adipose tissue
1
connective tissue
1
lung
Project
114
AMP
1
LungMap
Genome assembly (visualization)
6
GRCh38
6
hg19
Lab
99
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
5
Bing Ren, UCSD
1
Xin Sun, UCSD
Audit category:
91
inconsistent ontology term
2
audit script error
Audit category:
1
inconsistent assembly
assay_slims!
Transcription
replicates.library.nucleic_acid_term_name!
DNA
BIOSAMPLE
ASSAY
115 results
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RNA microarray
MeRIP-seq
ChIP-seq
STARR-seq
snDrop-seq
CRISPR genome editing followed by sgRNA sequencing
MPRA
snATAC-seq
tissue
bone element
84
pancreas
7
islet of Langerhans
4
kidney (Cortex-Medulla)
1
kidney (cortex)
1
+ See 5 more…
cell line
EndoC_BH1
6
1
HEK293T
2
HepG2
2
MIN6
1
Synthesized DNA
1
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