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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 87RNA microarray
  • 10MeRIP-seq
  • 7ChIP-seq
  • 5STARR-seq
  • 3snDrop-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1MPRA
  • 1snATAC-seq
Assay category
  • Transcription
  • 7DNA binding
  • 1DNA accessibility
Target of assay
  • 6control
  • 6histone
  • 6histone modification
  • 5nucleotide modification
  • 4broad histone mark
  • 2narrow histone mark
Date released
  • 87February, 2021
  • 10November, 2020
  • 7August, 2017
  • 6August, 2021
  • 2December, 2019
  • 1April, 2020
  • 1February, 2023
  • 1October, 2022
Available data
  • 85txt
  • 7bam
  • 7fastq
  • 7tagAlign
  • 6bed broadPeak
  • 6bed narrowPeak
  • 6bigBed narrowPeak
  • 6bigWig
  • 5tsv
Organism
  • 104Homo sapiens
Biosample type
  • 102tissue
  • 13cell line
Organ
  • 84bone element
  • 18pancreas
  • 8epithelium
  • 7kidney
  • 2liver
  • 1adipose tissue
  • 1connective tissue
  • 1lung
Project
  • 114AMP
  • 1LungMap
Genome assembly (visualization)
  • 6GRCh38
  • 6hg19
Lab
  • 99AMP-T2D consortium
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 5Bing Ren, UCSD
  • 1Xin Sun, UCSD
Audit category:
  • 91inconsistent ontology term
  • 2audit script error
Audit category:
  • 1inconsistent assembly
assay_slims!
  • Transcription
replicates.library.nucleic_acid_term_name!
  • DNA
BIOSAMPLE
ASSAY

115 results

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Clear Filters
RNA microarray
MeRIP-seq
ChIP-seq
STARR-seq
snDrop-seq
CRISPR genome editing followed by sgRNA sequencing
MPRA
snATAC-seq
tissue
bone element84
pancreas7
islet of Langerhans4
kidney (Cortex-Medulla)1
kidney (cortex)1
cell line
EndoC_BH161
HEK293T2
HepG22
MIN61
Synthesized DNA1
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