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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 181ChIP-seq
  • 105ATAC-seq
  • 28pCHi-C
  • 27DNase-seq
  • 9Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • Transcription
  • 181DNA binding
  • 140DNA accessibility
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 133histone
  • 133histone modification
  • 90narrow histone mark
  • 43broad histone mark
  • 33transcription factor
  • 17control
  • 9RNA binding protein
  • 2nucleotide modification
Date released
  • 70May, 2021
  • 47October, 2019
  • 45May, 2020
  • 40August, 2021
  • 34February, 2023
  • 33August, 2017
  • 30June, 2019
  • 29March, 2020
  • 7October, 2017
  • 5March, 2019
  • 4February, 2021
  • 4November, 2020
  • 3December, 2017
  • 3October, 2022
  • 2January, 2021
  • 2July, 2019
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1March, 2023
  • 1May, 2022
  • 1November, 2019
  • 1October, 2018
Available data
  • 245bam
  • 229bigWig
  • 173bed narrowPeak
  • 116tagAlign
  • 68bed bed3+
  • 43fastq
  • 40bigBed narrowPeak
  • 38tsv
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1txt
Organism
  • 367Homo sapiens
Biosample type
  • 165tissue
  • 137primary cell
  • 64in vitro differentiated cells
  • 1stem cell
Organ
  • 56pancreas
  • 51brain
  • 35connective tissue
  • 12epithelium
  • 12liver
  • 11heart
  • 11kidney
  • 8adipose tissue
  • 4bone element
  • 4skeleton
  • 2blood
  • 2blood vessel
  • 2bodily fluid
  • 2eye
  • 2intestine
  • 2musculature of body
  • 2vasculature
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 296AMP
  • 67T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 256hg19
  • 189GRCh38
Lab
  • 268AMP-T2D consortium
  • 80Kyle Gaulton, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 23inconsistent ontology term
  • 4audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
assay_slims!
  • Transcription
BIOSAMPLE
ASSAY

367 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
DNase-seq
Hi-C
snATAC-seq
MeRIP-seq
FAIRE-seq
Capture-C
snDrop-seq
DNAme array
tissue
islet of Langerhans22181224
brain612
liver611
heart41
kidney121
primary cell
monocyte4721
mesenchymal stem cell7
hepatocyte4
CD8-positive, alpha-beta T cell21
gabaergic neuron3
in vitro differentiated cells
neural progenitor cell2110
embryonic stem cell1141
adipocyte741
osteoblast11
cardiomyocytes (cardiac muscle cell)1
stem cell
mesenchymal stem cell1
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