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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1116ChIP-seq
  • 336ATAC-seq
  • 163DNase-seq
  • 87RNA microarray
  • 72snATAC-seq
  • 67WGBS
  • 15Hi-C
  • 8pCHi-C
  • 5GRO-seq
  • 2Capture-C
  • 2HiChIP
  • 2RRBS
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1FAIRE-seq
  • 1MPRA
  • 1STARR-seq
  • 1snDrop-seq
  • 1whole genome sequencing assay
Assay category
  • Transcription
  • 1116DNA binding
  • 572DNA accessibility
  • 69DNA methylation
  • 153D chromatin structure
  • 1DNA sequencing
Target of assay
  • 756histone modification
  • 755histone
  • 393broad histone mark
  • 361narrow histone mark
  • 266control
  • 94transcription factor
  • 32RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 1recombinant protein
Date released
  • 266August, 2017
  • 172October, 2019
  • 156June, 2019
  • 139May, 2022
  • 134February, 2021
  • 133May, 2021
  • 111November, 2017
  • 106May, 2019
  • 89August, 2021
  • 78April, 2019
  • 71February, 2023
  • 66October, 2018
  • 50May, 2020
  • 46September, 2018
  • 40May, 2024
  • 32December, 2017
  • 24February, 2018
  • 23November, 2018
  • 21July, 2019
  • 17November, 2019
  • 16October, 2017
  • 11January, 2021
  • 11May, 2023
  • 10April, 2020
  • 9January, 2019
  • 9March, 2020
  • 9September, 2017
  • 8January, 2018
  • 7August, 2020
  • 7December, 2018
  • 3September, 2020
  • 2December, 2019
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 1120bam
  • 1089bed narrowPeak
  • 982bigWig
  • 513bigBed narrowPeak
  • 449fastq
  • 256tagAlign
  • 197bed broadPeak
  • 164bed bed3+
  • 162bigBed broadPeak
  • 101zippedFastqFolder
  • 85txt
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6tsv
  • 5bed bed3
  • 1vcf
Organism
  • 1870Homo sapiens
Biosample type
  • 1277tissue
  • 351primary cell
  • 145in vitro differentiated cells
  • 104cell line
  • 4stem cell
Organ
  • 350pancreas
  • 231epithelium
  • 201heart
  • 190brain
  • 187liver
  • 183kidney
  • 157connective tissue
  • 125vasculature
  • 124blood vessel
  • 110limb
  • 92bone element
  • 82adipose tissue
  • 76artery
  • 72musculature of body
  • 38nerve
  • 36eye
  • 24spleen
  • 20embryo
  • 18ureter
  • 11blood
  • 11bodily fluid
  • 10lung
  • 8skeleton
  • 4gonad
  • 4ovary
  • 3vein
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 1682AMP
  • 138HPAP
  • 51T1D
  • 10LungMap
Genome assembly (visualization)
  • 1015GRCh38
  • 945hg19
  • 5hg18
Lab
  • 1447AMP-T2D consortium
  • 138Klaus Kaestner, Upenn
  • 129Kyle Gaulton, UCSD
  • 78Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 19Bing Ren, UCSD
  • 10Xin Sun, UCSD
Audit category:
  • 137inconsistent ontology term
  • 31audit script error
Audit category:
  • 63missing controlled_by
Audit category:
  • 18inconsistent control read length
  • 1inconsistent assembly
assay_slims!
  • Transcription
BIOSAMPLE
ASSAY

1881 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
Hi-C
pCHi-C
GRO-seq
Capture-C
HiChIP
RRBS
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
MPRA
STARR-seq
snDrop-seq
whole genome sequencing assay
tissue
liver10320131
kidney26751121
islet of Langerhans49314141
bone element84
heart left ventricle342241
primary cell
pancreatic alpha cell133525
monocyte3813
pancreatic beta cell122316
Langerhans cell48
CD8-positive, alpha-beta T cell33
in vitro differentiated cells
adipocyte60
embryonic stem cell291
pancreatic endoderm151
definitive endodermal cell51
primitive gut cell51
cell line
HepG24311
EndoC_BH113171221
smooth muscle cell of the coronary artery48
GM1287841
Panc12
stem cell
hESC1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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