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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
252
ATAC-seq
178
DNase-seq
28
snATAC-seq
16
Hi-C
4
FAIRE-seq
Assay category
907
DNA binding
Transcription
462
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Date released
163
June, 2019
81
February, 2023
72
August, 2021
39
May, 2022
21
November, 2019
21
October, 2019
12
July, 2019
11
May, 2023
10
April, 2020
10
November, 2018
9
March, 2020
February, 2021
8
January, 2021
8
October, 2017
5
August, 2017
5
March, 2019
2
January, 2018
1
August, 2022
Available data
381
bed narrowPeak
237
bam
224
bigWig
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
64
xls
41
fastq
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tsv
1
txt
Organism
477
Homo sapiens
Biosample type
478
tissue
270
primary cell
43
in vitro differentiated cells
26
cell line
Organ
151
kidney
86
pancreas
69
heart
44
blood vessel
44
vasculature
42
limb
41
artery
40
musculature of body
32
brain
31
eye
26
liver
18
ureter
12
epithelium
10
lung
8
adipose tissue
8
connective tissue
4
bone element
4
skeleton
3
nerve
2
spleen
1
pituitary gland
1
skin of body
Project
447
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
327
GRCh38
291
hg19
Lab
320
AMP-T2D consortium
82
Katalin Susztak, Upenn
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
audit script error
2
inconsistent ontology term
assay_slims!
Transcription
month_released!
February, 2021
BIOSAMPLE
ASSAY
478 results
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ATAC-seq
DNase-seq
snATAC-seq
Hi-C
FAIRE-seq
tissue
kidney
75
13
6
1
1
islet of Langerhans
68
1
7
3
1
coronary artery
36
2
liver
20
2
1
heart
18
1
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