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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
221
ATAC-seq
142
DNase-seq
28
snATAC-seq
13
Hi-C
3
FAIRE-seq
Assay category
1118
Transcription
774
DNA binding
394
DNA accessibility
23
DNA methylation
13
3D chromatin structure
Date released
136
June, 2019
72
August, 2021
46
February, 2023
39
May, 2022
21
November, 2019
20
October, 2019
11
May, 2023
10
April, 2020
November, 2018
8
February, 2021
8
January, 2021
8
July, 2019
8
October, 2017
7
March, 2020
5
August, 2017
5
March, 2019
2
January, 2018
1
August, 2022
Available data
313
bed narrowPeak
204
bam
183
bigWig
147
bigBed narrowPeak
142
bed broadPeak
141
bed bed3+
140
bigBed broadPeak
64
xls
31
fastq
8
hic
7
bedpe bed3+
5
bed bed3
1
bedpe
1
tsv
1
txt
Organism
406
Homo sapiens
Biosample type
407
tissue
295
primary cell
47
in vitro differentiated cells
27
cell line
Organ
151
kidney
83
pancreas
heart
48
limb
44
blood vessel
44
vasculature
41
artery
40
musculature of body
31
eye
30
brain
23
liver
18
ureter
12
bone element
12
epithelium
12
skeleton
10
lung
7
adipose tissue
7
connective tissue
3
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
376
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
260
GRCh38
257
hg19
Lab
249
AMP-T2D consortium
82
Katalin Susztak, Upenn
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
audit script error
2
inconsistent ontology term
month_released!
November, 2018
organ_slims!
heart
BIOSAMPLE
ASSAY
407 results
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ATAC-seq
DNase-seq
snATAC-seq
Hi-C
FAIRE-seq
tissue
kidney
75
13
6
1
1
islet of Langerhans
68
1
7
3
1
liver
20
1
retina
15
3
muscle of arm
17
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