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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ATAC-seq
21
snATAC-seq
Assay category
1596
Transcription
74
DNA accessibility
47
DNA methylation
0
3D chromatin structure
Date released
60
May, 2022
12
February, 2023
2
March, 2020
Available data
482
bed narrowPeak
379
bam
345
bigWig
231
bigBed narrowPeak
205
bed bed3+
199
bed broadPeak
197
bigBed broadPeak
93
fastq
64
xls
60
zippedFastqFolder
23
hic
20
bedpe bed3+
14
tsv
12
bed bed3
7
bed bedgraph
5
hdf5
4
txt
3
cool
1
bedpe
1
tar
Organism
74
Homo sapiens
Biosample type
72
primary cell
1
cell line
1
tissue
Organ
41
pancreas
40
epithelium
Project
60
HPAP
14
AMP
Genome assembly (visualization)
2
hg19
Lab
60
Klaus Kaestner, Upenn
14
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
month_released!
November, 2018
BIOSAMPLE
ASSAY
74 results
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ATAC-seq
snATAC-seq
primary cell
pancreatic alpha cell
22
Langerhans cell
21
pancreatic beta cell
13
pancreatic acinar cell
4
gabaergic neuron
3
+ See 3 more…
cell line
EndoC_BH1
1
tissue
islet of Langerhans
1
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