Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
7
Hi-C
Assay category
270
Transcription
217
DNA accessibility
209
DNA binding
11
DNA methylation
7
3D chromatin structure
Target of assay
179
histone
179
histone modification
95
broad histone mark
84
narrow histone mark
20
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
31
June, 2019
25
October, 2019
15
August, 2017
9
November, 2017
5
May, 2019
4
August, 2021
4
July, 2019
1
March, 2020
1
March, 2023
Available data
193
bigWig
180
bed narrowPeak
172
bam
100
tagAlign
57
bigBed narrowPeak
24
fastq
21
bed broadPeak
21
bigBed broadPeak
7
bed bed3+
4
hdf5
3
hic
1
bedpe bed3+
Organism
216
Homo sapiens
Biosample type
802
tissue
458
cell line
216
primary cell
199
in vitro differentiated cells
3
stem cell
Organ
99
epithelium
pancreas
27
vasculature
24
blood vessel
19
vein
15
kidney
13
connective tissue
12
brain
10
musculature of body
5
heart
5
liver
3
eye
Project
131
AMP
84
T1D
1
ITG
Genome assembly (visualization)
195
hg19
150
GRCh38
Lab
117
Kyle Gaulton, UCSD
98
AMP-T2D consortium
1
ITG
Audit category:
25
inconsistent ontology term
1
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
month_released!
July, 2018
organ_slims!
pancreas
BIOSAMPLE
ASSAY
216 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
endothelial cell of umbilical vein
17
2
skeletal muscle myoblast
15
epithelial cell of proximal tubule
10
+ See 16 more…
See all biosamples
Download