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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
10
Hi-C
Assay category
388
Transcription
288
DNA accessibility
269
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
51
August, 2017
32
September, 2018
27
June, 2019
25
October, 2019
6
November, 2017
4
August, 2021
4
July, 2019
4
May, 2019
3
October, 2022
1
March, 2020
1
March, 2023
Available data
241
bigWig
232
bam
216
bed narrowPeak
100
tagAlign
89
fastq
47
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
7
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
Organism
279
Homo sapiens
Biosample type
895
tissue
423
cell line
279
primary cell
191
in vitro differentiated cells
3
stem cell
Organ
94
epithelium
73
pancreas
25
vasculature
23
blood vessel
19
vein
13
kidney
12
connective tissue
10
musculature of body
9
brain
5
liver
4
heart
2
eye
Project
191
AMP
84
T1D
3
HPAP
1
ITG
Genome assembly (visualization)
246
hg19
199
GRCh38
Lab
158
AMP-T2D consortium
117
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
1
ITG
Audit category:
22
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
July, 2018
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
279 results
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ChIP-seq
Hi-C
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
2
pancreatic alpha cell
13
1
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