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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
529
ChIP-seq
4
Hi-C
Assay category
529
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
60
December, 2017
50
May, 2020
48
August, 2017
44
November, 2018
23
August, 2021
5
October, 2019
1
December, 2018
1
July, 2019
1
March, 2020
Available data
487
bam
430
fastq
410
bigWig
390
bed narrowPeak
329
bigBed narrowPeak
86
tagAlign
54
bed broadPeak
54
bigBed broadPeak
7
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
hdf5
Organism
533
Homo sapiens
Biosample type
360
cell line
154
tissue
14
in vitro differentiated cells
5
primary cell
Organ
533
liver
227
pancreas
221
brain
152
connective tissue
137
heart
136
epithelium
107
vasculature
104
blood vessel
73
adipose tissue
70
limb
53
kidney
50
blood
50
bodily fluid
45
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
19
vein
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
533
AMP
Genome assembly (visualization)
409
hg19
339
GRCh38
Lab
514
AMP-T2D consortium
19
Bing Ren, UCSD
Audit category:
25
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
16
inconsistent control read length
organ_slims!
eye
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
533 results
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ChIP-seq
Hi-C
cell line
HepG2
358
2
tissue
liver
143
1
right lobe of liver
10
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
4
endothelial cell of hepatic sinusoid
1
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