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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
450
ChIP-seq
4
Hi-C
Assay category
450
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
49
November, 2018
46
December, 2017
23
May, 2020
17
August, 2021
16
August, 2017
1
December, 2018
1
July, 2019
1
March, 2020
Available data
431
bam
409
fastq
351
bigWig
333
bed narrowPeak
317
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
28
tagAlign
4
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
hdf5
Organism
454
Homo sapiens
Biosample type
362
cell line
87
tissue
3
in vitro differentiated cells
2
primary cell
Organ
454
liver
76
connective tissue
76
pancreas
59
blood
59
bodily fluid
44
epithelium
41
adipose tissue
40
heart
36
vasculature
34
blood vessel
34
brain
23
kidney
21
limb
14
artery
14
spleen
12
musculature of body
11
nerve
10
embryo
4
vein
2
eye
Project
454
AMP
Genome assembly (visualization)
350
hg19
291
GRCh38
Lab
438
AMP-T2D consortium
16
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
organ_slims!
ovary
target.investigated_as!
histone
BIOSAMPLE
ASSAY
454 results
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ChIP-seq
Hi-C
cell line
HepG2
360
2
tissue
liver
81
1
right lobe of liver
5
in vitro differentiated cells
hepatocyte
3
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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