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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
Hi-C
1
whole genome sequencing assay
Assay category
1808
DNA binding
1779
Transcription
722
DNA accessibility
95
DNA methylation
29
3D chromatin structure
1
DNA sequencing
Date released
8
July, 2019
8
March, 2020
4
August, 2021
3
October, 2019
3
October, 2022
1
December, 2018
1
March, 2019
1
March, 2023
1
November, 2019
Available data
18
hic
15
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
3
cool
1
bedpe
1
fastq
1
vcf
Organism
30
Homo sapiens
Biosample type
16
tissue
10
primary cell
4
cell line
Organ
8
pancreas
7
epithelium
6
musculature of body
5
blood vessel
5
liver
5
vasculature
4
limb
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
Project
26
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
22
hg19
2
GRCh38
Lab
21
AMP-T2D consortium
4
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
files.file_type!
xls
organ_slims!
gonad
BIOSAMPLE
ASSAY
30 results
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Hi-C
whole genome sequencing assay
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
+ See 4 more…
cell line
HepG2
2
1
Panc1
1
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