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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
187
single cell RNA-seq
10
Hi-C
2
small RNA-seq
Assay category
436
Transcription
288
DNA accessibility
279
DNA binding
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
76
February, 2023
56
September, 2020
55
May, 2021
48
July, 2018
47
May, 2020
43
April, 2018
33
May, 2022
27
September, 2018
22
July, 2019
13
February, 2021
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2019
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
258
bigWig
252
bam
252
tsv
248
fastq
52
zippedFastqFolder
6
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
446
Homo sapiens
Biosample type
1243
tissue
446
primary cell
142
in vitro differentiated cells
119
cell line
2
stem cell
Organ
170
epithelium
158
pancreas
16
connective tissue
6
blood vessel
6
brain
6
kidney
6
liver
6
vasculature
4
heart
2
adipose tissue
2
artery
2
musculature of body
2
vein
1
pericardium
Project
180
HPAP
169
AMP
96
T1D
1
ITG
Genome assembly (visualization)
263
hg19
253
GRCh38
Lab
180
Klaus Kaestner, Upenn
167
AMP-T2D consortium
98
Kyle Gaulton, UCSD
1
ITG
Audit category:
11
inconsistent ontology term
4
audit script error
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
446 results
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total RNA-seq
single cell RNA-seq
Hi-C
small RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
52
12
1
monocyte
54
exocrine cell
39
pancreatic beta cell
21
12
1
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