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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
261
single cell RNA-seq
241
total RNA-seq
28
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
527
DNA binding
506
Transcription
366
DNA accessibility
80
DNA methylation
28
3D chromatin structure
1
DNA sequencing
Date released
168
August, 2021
90
February, 2023
60
May, 2022
56
September, 2020
47
September, 2023
25
February, 2020
18
February, 2021
16
October, 2019
10
March, 2020
9
April, 2020
8
July, 2019
4
July, 2018
4
March, 2023
4
May, 2021
3
May, 2023
3
October, 2022
2
May, 2020
2
November, 2019
1
December, 2018
1
December, 2019
1
March, 2019
1
November, 2018
1
September, 2018
Available data
142
tsv
135
fastq
72
txt
52
zippedFastqFolder
18
hic
16
bedpe bed3+
8
csv
6
bam
6
bed bed3+
6
bigWig
4
hdf5
3
cool
1
bedpe
Organism
530
Homo sapiens
Biosample type
325
tissue
193
primary cell
in vitro differentiated cells
14
cell line
2
stem cell
Organ
114
kidney
99
heart
81
pancreas
63
epithelium
35
liver
19
eye
15
brain
14
blood vessel
14
vasculature
9
lung
9
musculature of body
7
limb
4
artery
4
bone element
4
skeleton
3
connective tissue
2
adipose tissue
2
vein
1
nerve
1
spinal cord
Project
287
AMP
180
HPAP
47
KPMP
9
LungMap
7
T1D
4
community
Genome assembly (visualization)
1299
hg19
GRCh38
Lab
186
AMP-T2D consortium
180
Klaus Kaestner, Upenn
61
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
14
Kyle Gaulton, UCSD
13
Bing Ren, UCSD
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
Audit category:
9
audit script error
2
inconsistent ontology term
assembly!
GRCh38
biosample_type!
in vitro differentiated cells
organ_slims!
thymus
BIOSAMPLE
ASSAY
534 results
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single cell RNA-seq
total RNA-seq
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
64
49
1
islet of Langerhans
32
3
liver
1
20
1
heart left ventricle
18
1
heart right ventricle
17
1
+ See 46 more…
primary cell
Langerhans cell
85
pancreatic alpha cell
42
1
exocrine cell
39
pancreatic beta cell
11
1
CD8-positive, alpha-beta T cell
2
+ See 10 more…
cell line
HepG2
9
2
EndoC-BH1
1
1
EndoC_BH1
1
stem cell
SB Ad3.1
1
1
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