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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
3
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
466
DNA binding
98
Transcription
31
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Date released
78
February, 2021
August, 2021
5
January, 2019
5
October, 2019
4
March, 2020
4
May, 2021
2
March, 2023
2
November, 2019
1
December, 2018
Available data
97
bigWig
96
bam
96
tsv
6
fastq
1
bed bed3+
1
bedpe bed3+
1
hdf5
1
hic
Organism
99
Homo sapiens
Biosample type
1085
tissue
446
primary cell
135
in vitro differentiated cells
101
cell line
2
stem cell
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
35
epithelium
35
pancreas
6
liver
4
kidney
Project
97
AMP
2
T1D
2
community
Genome assembly (visualization)
98
hg19
97
GRCh38
Lab
99
AMP-T2D consortium
2
Anna Gloyn, Oxford
Audit category:
37
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
August, 2021
BIOSAMPLE
ASSAY
101 results
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total RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
1
HepG2
5
1
EndoC-BH1
1
1
early embryonic cell
2
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