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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
Assay category
218
DNA binding
37
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
3
control
Date released
14
July, 2019
12
February, 2020
1
October, 2019
Available data
24
tsv
15
bigWig
12
bam
3
bed bed3+
3
hdf5
Organism
27
Homo sapiens
Biosample type
21
tissue
6
primary cell
Organ
482
connective tissue
476
pancreas
401
adipose tissue
209
epithelium
197
liver
169
heart
126
kidney
72
blood vessel
72
vasculature
62
bone element
58
artery
27
brain
19
eye
15
musculature of body
14
embryo
11
limb
9
lung
5
nerve
4
skeleton
2
vein
1
pericardium
1
spinal cord
Project
27
AMP
Genome assembly (visualization)
15
hg19
12
GRCh38
Lab
27
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
27 results
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total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
tissue
frontal cortex
2
1
cerebellum
2
cerebellum (Hemisphere)
1
1
diencephalon
1
1
temporal lobe
1
1
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primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
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