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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
Hi-C
Assay category
28
3D chromatin structure
Date released
10
March, 2020
4
July, 2019
4
October, 2019
3
August, 2021
3
October, 2022
2
November, 2019
1
December, 2018
1
March, 2019
Available data
22
hic
20
bedpe bed3+
bed bed3+
4
bigWig
4
hdf5
3
cool
1
bedpe
1
fastq
Organism
28
Homo sapiens
Biosample type
16
tissue
5
primary cell
4
in vitro differentiated cells
3
cell line
Organ
8
pancreas
6
epithelium
6
musculature of body
4
limb
3
blood vessel
3
heart
3
liver
3
vasculature
2
vein
1
kidney
Project
25
AMP
3
HPAP
Genome assembly (visualization)
22
hg19
GRCh38
Lab
21
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
4
audit script error
assembly!
GRCh38
files.file_type!
bed bed3+
organ_slims!
nerve
BIOSAMPLE
ASSAY
28 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
primary cell
endothelial cell of umbilical vein
2
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
2
EndoC_BH1
1
See all biosamples
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