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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
Hi-C
Assay category
25
3D chromatin structure
Date released
8
March, 2020
6
July, 2019
October, 2019
3
August, 2021
3
October, 2022
2
November, 2019
1
December, 2018
1
March, 2019
1
March, 2023
Available data
17
hic
15
bedpe bed3+
3
cool
2
bed bed3+
2
bigWig
2
hdf5
1
bedpe
1
fastq
Organism
25
Homo sapiens
Biosample type
14
tissue
6
primary cell
3
cell line
2
in vitro differentiated cells
Organ
8
pancreas
7
epithelium
6
musculature of body
blood vessel
4
limb
4
liver
4
vasculature
3
brain
2
heart
1
connective tissue
1
kidney
1
vein
Project
21
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
18
hg19
1
GRCh38
Lab
17
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
3
audit script error
3
inconsistent ontology term
month_released!
October, 2019
organ_slims!
blood vessel
mammary gland
BIOSAMPLE
ASSAY
25 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
primary cell
astrocyte of the cerebellum
1
brain pericyte
1
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
+ See 1 more…
cell line
HepG2
2
EndoC_BH1
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
See all biosamples
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