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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 32Hi-C
Assay category
  • 605DNA binding
  • 517Transcription
  • 391DNA accessibility
  • 80DNA methylation
  • 323D chromatin structure
  • 1DNA sequencing
Date released
  • 10March, 2020
  • 8July, 2019
  • 4October, 2019
  • 3August, 2021
  • 3October, 2022
  • 2November, 2019
  • 1December, 2018
  • 1March, 2019
Available data
  • 22hic
  • 20bedpe bed3+
  • 4bed bed3+
  • 4bigWig
  • 4hdf5
  • 3cool
  • 1bedpe
  • 1fastq
Organism
  • 32Homo sapiens
Biosample type
  • 16tissue
  • 9primary cell
  • 4in vitro differentiated cells
  • 3cell line
Organ
  • 8epithelium
  • 8pancreas
  • 6musculature of body
  • 5blood vessel
  • 5vasculature
  • 4limb
  • 4liver
  • 3brain
  • 3heart
  • 2vein
  • 1connective tissue
  • 1kidney
Project
  • 29AMP
  • 3HPAP
Genome assembly (visualization)
  • 27hg19
  • GRCh38
Lab
  • 25AMP-T2D consortium
  • 3Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 1Katalin Susztak, Upenn
Audit category:
  • 5inconsistent ontology term
  • 4audit script error
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

32 results

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Hi-C
tissue
gastrocnemius medialis4
islet of Langerhans3
psoas muscle2
aorta1
heart1
primary cell
endothelial cell of umbilical vein2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
endothelial cell of hepatic sinusoid1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
cell line
HepG22
EndoC_BH11
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