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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 30Hi-C
Assay category
  • 1853DNA binding
  • 1848Transcription
  • 744DNA accessibility
  • 97DNA methylation
  • 303D chromatin structure
Date released
  • 10March, 2020
  • 8July, 2019
  • 5October, 2019
  • 3October, 2022
  • 2November, 2019
  • 1December, 2018
  • 1March, 2023
Available data
  • 20hic
  • 18bedpe bed3+
  • 5bed bed3+
  • 5bigWig
  • 5hdf5
  • 3cool
  • 1fastq
Organism
  • 30Homo sapiens
Biosample type
  • 13tissue
  • 10primary cell
  • 4in vitro differentiated cells
  • 3cell line
Organ
  • 8epithelium
  • 7pancreas
  • 6musculature of body
  • 5blood vessel
  • 5vasculature
  • 4limb
  • 3brain
  • 3heart
  • 3liver
  • 2vein
  • 1connective tissue
Project
  • 26AMP
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 24hg19
  • 2GRCh38
Lab
  • 26AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
  • 1ITG
Audit category:
  • 5inconsistent ontology term
  • 4audit script error
Audit category:
  • 1inconsistent assembly
award.rfa!
  • AMP2
BIOSAMPLE
ASSAY

30 results

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Hi-C
tissue
gastrocnemius medialis4
psoas muscle2
aorta1
heart1
heart left ventricle1
primary cell
endothelial cell of umbilical vein2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
chondrocytes1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
cell line
EndoC_BH11
HepG21
Panc11
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