Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 30Hi-C
Assay category
  • 1803Transcription
  • 1387DNA binding
  • 801DNA accessibility
  • 96DNA methylation
  • 303D chromatin structure
Date released
  • 10March, 2020
  • 8July, 2019
  • 4October, 2019
  • 3October, 2022
  • 2August, 2021
  • 1March, 2019
  • 1March, 2023
  • 1November, 2019
Available data
  • 21hic
  • 18bedpe bed3+
  • 4bed bed3+
  • 4bigWig
  • 4hdf5
  • 3cool
  • 1bedpe
Organism
  • 30Homo sapiens
Biosample type
  • 16tissue
  • 10primary cell
  • cell line
  • 4in vitro differentiated cells
Organ
  • 7epithelium
  • 7pancreas
  • 6musculature of body
  • 5blood vessel
  • 5vasculature
  • 4limb
  • 3brain
  • 3heart
  • 2liver
  • 2vein
  • 1connective tissue
  • 1kidney
Project
  • 26AMP
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 24hg19
  • 1GRCh38
Lab
  • 23AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
  • 2Bing Ren, UCSD
  • 1ITG
  • 1Katalin Susztak, Upenn
Audit category:
  • 4audit script error
  • 4inconsistent ontology term
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

30 results

search-icontable-tab-icon
Clear Filters
Hi-C
tissue
gastrocnemius medialis4
islet of Langerhans3
psoas muscle2
aorta1
heart1
primary cell
endothelial cell of umbilical vein2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
chondrocytes1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego