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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
Hi-C
Assay category
1715
Transcription
1315
DNA binding
780
DNA accessibility
70
DNA methylation
22
3D chromatin structure
1
DNA sequencing
Date released
July, 2019
8
March, 2020
3
August, 2021
3
October, 2019
3
October, 2022
2
November, 2019
1
December, 2018
1
March, 2019
1
March, 2023
Available data
19
hic
16
bedpe bed3+
3
cool
1
bed bed3+
1
bedpe
1
bigWig
1
fastq
1
hdf5
Organism
22
Homo sapiens
Biosample type
12
tissue
6
primary cell
4
cell line
in vitro differentiated cells
Organ
9
pancreas
6
epithelium
3
blood vessel
3
heart
3
liver
3
vasculature
2
musculature of body
2
vein
1
kidney
Project
18
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
19
hg19
2
GRCh38
Lab
14
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
audit script error
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
files.file_type!
tagAlign
lab.title!
Stephen Parker, UMich
month_released!
July, 2019
BIOSAMPLE
ASSAY
22 results
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Hi-C
tissue
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
2
EndoC_BH1
1
Panc1
1
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