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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 24Hi-C
Assay category
  • 1592DNA binding
  • 1482Transcription
  • 544DNA accessibility
  • 39DNA methylation
  • 243D chromatin structure
  • 1DNA sequencing
Date released
  • 9March, 2020
  • 4July, 2019
  • 4October, 2019
  • 3August, 2021
  • 2November, 2019
  • 1December, 2018
  • 1March, 2019
Available data
  • 17hic
  • 16bedpe bed3+
  • 1bed bed3+
  • 1bedpe
  • 1bigWig
  • 1fastq
  • 1hdf5
Organism
  • 24Homo sapiens
Biosample type
  • 16tissue
  • primary cell
  • 4cell line
  • 4in vitro differentiated cells
Organ
  • 6musculature of body
  • 6pancreas
  • 4limb
  • 3heart
  • 3liver
  • 1blood vessel
  • 1epithelium
  • 1kidney
  • 1vasculature
Project
  • 24AMP
Genome assembly (visualization)
  • 18hg19
  • 1GRCh38
Lab
  • 20AMP-T2D consortium
  • 3Bing Ren, UCSD
  • 1Katalin Susztak, Upenn
Audit category:
  • 5inconsistent ontology term
Audit category:
  • 1inconsistent assembly
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

24 results

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Clear Filters
Hi-C
tissue
gastrocnemius medialis4
islet of Langerhans3
psoas muscle2
aorta1
heart1
cell line
HepG22
EndoC_BH11
Panc11
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
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