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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 18Hi-C
Assay category
  • 964DNA binding
  • 691Transcription
  • 362DNA accessibility
  • 59DNA methylation
  • 183D chromatin structure
  • 1DNA sequencing
Date released
  • 4July, 2019
  • 4October, 2019
  • 3March, 2020
  • 3October, 2022
  • 1August, 2021
  • 1December, 2018
  • 1March, 2023
  • 1November, 2019
Available data
  • 12hic
  • 10bedpe bed3+
  • 5bed bed3+
  • 5bigWig
  • 5hdf5
  • 3cool
  • 1fastq
Organism
  • 18Homo sapiens
Biosample type
  • tissue
  • 10primary cell
  • 4cell line
  • 4in vitro differentiated cells
Organ
  • 8epithelium
  • 5pancreas
  • 4blood vessel
  • 4vasculature
  • 3brain
  • 3liver
  • 2vein
  • 1connective tissue
Project
  • 14AMP
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 16hg19
  • 2GRCh38
Lab
  • 13AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
Audit category:
  • 5inconsistent ontology term
  • 4audit script error
Audit category:
  • 1inconsistent assembly
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

18 results

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Hi-C
primary cell
endothelial cell of umbilical vein2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
chondrocytes1
cell line
HepG22
EndoC_BH11
Panc11
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
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