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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
Hi-C
Assay category
1621
DNA binding
1437
Transcription
457
DNA accessibility
44
DNA methylation
21
3D chromatin structure
1
DNA sequencing
Date released
9
March, 2020
4
July, 2019
4
October, 2019
2
August, 2021
1
December, 2018
1
March, 2023
Available data
16
hic
13
bedpe bed3+
bed bed3+
4
bigWig
4
hdf5
1
fastq
Organism
21
Homo sapiens
Biosample type
12
tissue
4
in vitro differentiated cells
3
primary cell
2
cell line
Organ
pancreas
6
epithelium
6
musculature of body
4
limb
3
blood vessel
3
heart
3
liver
3
vasculature
2
vein
1
kidney
Project
20
AMP
1
ITG
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
18
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
1
audit script error
files.file_type!
bed bed3+
organ_slims!
esophagus
pancreas
BIOSAMPLE
ASSAY
21 results
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Hi-C
tissue
gastrocnemius medialis
4
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
cell line
HepG2
2
See all biosamples
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