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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
Hi-C
Assay category
1724
Transcription
1695
DNA binding
772
DNA accessibility
70
DNA methylation
6
3D chromatin structure
1
DNA sequencing
Date released
July, 2019
2
October, 2019
1
August, 2021
1
December, 2018
1
March, 2019
1
March, 2023
Available data
23
hic
bedpe bed3+
3
cool
1
bed bed3+
1
bedpe
1
bigWig
1
fastq
1
hdf5
Organism
6
Homo sapiens
Biosample type
2
cell line
2
primary cell
2
tissue
Organ
2
pancreas
1
blood vessel
1
epithelium
1
kidney
1
liver
1
vasculature
1
vein
Project
5
AMP
1
ITG
Genome assembly (visualization)
4
hg19
2
GRCh38
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
1
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
bedpe bed3+
lab.title!
Kyle Gaulton, UCSD
month_released!
July, 2019
organ_slims!
embryo
BIOSAMPLE
ASSAY
6 results
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Hi-C
cell line
HepG2
1
Panc1
1
primary cell
chondrocytes
1
endothelial cell of umbilical vein
1
tissue
islet of Langerhans
1
kidney
1
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