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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
Hi-C
Assay category
1909
Transcription
1426
DNA binding
797
DNA accessibility
91
DNA methylation
10
3D chromatin structure
1
DNA sequencing
Date released
4
July, 2019
2
October, 2019
1
August, 2021
1
December, 2018
1
March, 2019
1
March, 2023
Available data
21
hic
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
3
cool
1
bedpe
1
fastq
Organism
10
Homo sapiens
Biosample type
6
primary cell
2
cell line
2
tissue
Organ
4
limb
musculature of body
3
blood vessel
3
brain
3
epithelium
3
vasculature
2
liver
2
pancreas
1
connective tissue
1
kidney
1
vein
Project
9
AMP
1
ITG
Genome assembly (visualization)
8
hg19
2
GRCh38
Lab
7
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
1
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
bedpe bed3+
month_released!
November, 2017
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
10 results
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Hi-C
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
endothelial cell of hepatic sinusoid
1
+ See 1 more…
cell line
HepG2
1
Panc1
1
tissue
islet of Langerhans
1
kidney
1
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