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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
Hi-C
Assay category
1316
Transcription
1067
DNA binding
597
DNA accessibility
19
DNA methylation
14
3D chromatin structure
1
DNA sequencing
Date released
7
March, 2020
July, 2019
3
October, 2019
2
August, 2021
1
December, 2018
1
March, 2023
Available data
13
hic
11
bedpe bed3+
1
fastq
Organism
14
Homo sapiens
Biosample type
7
tissue
4
in vitro differentiated cells
2
cell line
1
primary cell
Organ
pancreas
6
epithelium
blood vessel
3
heart
3
liver
3
vasculature
2
musculature of body
2
vein
1
kidney
Project
13
AMP
1
ITG
Genome assembly (visualization)
12
hg19
1
GRCh38
Lab
11
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
month_released!
July, 2019
organ_slims!
blood vessel
pancreas
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
14 results
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Hi-C
tissue
psoas muscle
2
heart
1
heart left ventricle
1
heart right ventricle
1
kidney
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
2
primary cell
chondrocytes
1
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