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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 24Hi-C
Assay category
  • 1903Transcription
  • 1868DNA binding
  • 829DNA accessibility
  • 97DNA methylation
  • 243D chromatin structure
  • 1DNA sequencing
Date released
  • March, 2020
  • 8July, 2019
  • 5October, 2019
  • 3August, 2021
  • 3October, 2022
  • 2November, 2019
  • 1December, 2018
  • 1March, 2019
  • 1March, 2023
Available data
  • 13hic
  • 10bedpe bed3+
  • 5bed bed3+
  • 5bigWig
  • 5hdf5
  • 3cool
  • 1bedpe
  • 1fastq
Organism
  • 24Homo sapiens
Biosample type
  • 9primary cell
  • 9tissue
  • 4cell line
  • 2in vitro differentiated cells
Organ
  • 8pancreas
  • 7epithelium
  • 4limb
  • 4musculature of body
  • 3blood vessel
  • 3brain
  • 3liver
  • 3vasculature
  • 1connective tissue
  • 1heart
  • 1kidney
  • 1vein
Project
  • 20AMP
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 17hg19
  • 2GRCh38
Lab
  • 16AMP-T2D consortium
  • 3Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 1ITG
  • 1Katalin Susztak, Upenn
Audit category:
  • 4audit script error
  • 3inconsistent ontology term
Audit category:
  • 1inconsistent assembly
month_released!
  • March, 2020
BIOSAMPLE
ASSAY

24 results

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Clear Filters
Hi-C
primary cell
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
chondrocytes1
endothelial cell of hepatic sinusoid1
endothelial cell of umbilical vein1
pancreatic acinar cell1
pancreatic alpha cell1
pancreatic beta cell1
tissue
gastrocnemius medialis4
islet of Langerhans3
heart1
kidney1
cell line
HepG22
EndoC_BH11
Panc11
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1
cardiomyocytes (cardiac muscle cell)1
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