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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 24Hi-C
Assay category
  • 1903Transcription
  • 1868DNA binding
  • 828DNA accessibility
  • 97DNA methylation
  • 243D chromatin structure
  • 1DNA sequencing
Date released
  • March, 2020
  • 8July, 2019
  • 5October, 2019
  • 3August, 2021
  • 3October, 2022
  • 2November, 2019
  • 1December, 2018
  • 1March, 2019
  • 1March, 2023
Available data
  • 13hic
  • 10bedpe bed3+
  • 5bed bed3+
  • 5bigWig
  • 5hdf5
  • 3cool
  • 1bedpe
  • 1fastq
Organism
  • 24Homo sapiens
Biosample type
  • 9primary cell
  • 9tissue
  • 4cell line
  • 2in vitro differentiated cells
Organ
  • 8pancreas
  • 7epithelium
  • 4limb
  • 4musculature of body
  • 3blood vessel
  • 3brain
  • 3liver
  • 3vasculature
  • 1connective tissue
  • 1heart
  • 1kidney
  • 1vein
Project
  • 20AMP
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 17hg19
  • 2GRCh38
Lab
  • 16AMP-T2D consortium
  • 3Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 1ITG
  • 1Katalin Susztak, Upenn
Audit category:
  • 4audit script error
  • 3inconsistent ontology term
Audit category:
  • 1inconsistent assembly
month_released!
  • March, 2020
BIOSAMPLE
ASSAY

24 results

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Clear Filters
Hi-C
primary cell
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
chondrocytes1
endothelial cell of hepatic sinusoid1
tissue
gastrocnemius medialis4
islet of Langerhans3
heart1
kidney1
cell line
HepG22
EndoC_BH11
Panc11
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1
cardiomyocytes (cardiac muscle cell)1
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