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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 32Hi-C
Assay category
  • 1898Transcription
  • 1858DNA binding
  • 806DNA accessibility
  • 97DNA methylation
  • 323D chromatin structure
  • 1DNA sequencing
Date released
  • 10March, 2020
  • 8July, 2019
  • 5October, 2019
  • 3August, 2021
  • 3October, 2022
  • November, 2019
  • 1December, 2018
  • 1March, 2019
  • 1March, 2023
Available data
  • 21hic
  • 18bedpe bed3+
  • 5bed bed3+
  • 5bigWig
  • 5hdf5
  • 3cool
  • 1bedpe
  • 1fastq
Organism
  • 32Homo sapiens
Biosample type
  • 15tissue
  • 10primary cell
  • 4in vitro differentiated cells
  • 3cell line
Organ
  • 7epithelium
  • 7pancreas
  • 6musculature of body
  • 5blood vessel
  • 5vasculature
  • 4limb
  • 4liver
  • 3brain
  • 3heart
  • 2vein
  • 1connective tissue
  • 1kidney
Project
  • 28AMP
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 25hg19
  • 2GRCh38
Lab
  • 24AMP-T2D consortium
  • 3Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 1ITG
  • 1Katalin Susztak, Upenn
Audit category:
  • 4audit script error
  • 4inconsistent ontology term
Audit category:
  • 1inconsistent assembly
month_released!
  • November, 2019
BIOSAMPLE
ASSAY

32 results

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Clear Filters
Hi-C
tissue
gastrocnemius medialis4
islet of Langerhans2
psoas muscle2
aorta1
heart1
primary cell
endothelial cell of umbilical vein2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
chondrocytes1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
cell line
HepG22
Panc11
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