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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 29Hi-C
Assay category
  • 1888Transcription
  • 1629DNA binding
  • 799DNA accessibility
  • 97DNA methylation
  • 293D chromatin structure
  • 1DNA sequencing
Date released
  • 10March, 2020
  • 8July, 2019
  • October, 2019
  • 3August, 2021
  • 3October, 2022
  • 2November, 2019
  • 1December, 2018
  • 1March, 2019
  • 1March, 2023
Available data
  • 19hic
  • 17bedpe bed3+
  • 4bed bed3+
  • 4bigWig
  • 4hdf5
  • 3cool
  • 1bedpe
  • 1fastq
Organism
  • 29Homo sapiens
Biosample type
  • 15tissue
  • 9primary cell
  • 3cell line
  • 2in vitro differentiated cells
Organ
  • 8pancreas
  • 7epithelium
  • 6musculature of body
  • 4blood vessel
  • 4limb
  • 4liver
  • 4vasculature
  • 3brain
  • 2heart
  • 1connective tissue
  • 1kidney
  • 1vein
Project
  • 25AMP
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 22hg19
  • 1GRCh38
Lab
  • 21AMP-T2D consortium
  • 3Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 1ITG
  • 1Katalin Susztak, Upenn
Audit category:
  • 3audit script error
  • 3inconsistent ontology term
month_released!
  • October, 2019
BIOSAMPLE
ASSAY

29 results

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Clear Filters
Hi-C
tissue
gastrocnemius medialis4
islet of Langerhans3
psoas muscle2
aorta1
heart left ventricle1
primary cell
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
chondrocytes1
endothelial cell of hepatic sinusoid1
cell line
HepG22
EndoC_BH11
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
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