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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 29Hi-C
Assay category
  • 1851Transcription
  • 1772DNA binding
  • 776DNA accessibility
  • 95DNA methylation
  • 293D chromatin structure
  • 1DNA sequencing
Date released
  • 8March, 2020
  • 6July, 2019
  • 4October, 2019
  • 3August, 2021
  • 3October, 2022
  • 2November, 2019
  • 1December, 2018
  • 1March, 2019
  • 1March, 2023
Available data
  • 20hic
  • 18bedpe bed3+
  • 3bed bed3+
  • 3bigWig
  • 3cool
  • 3hdf5
  • 1bedpe
  • 1fastq
Organism
  • 29Homo sapiens
Biosample type
  • 15tissue
  • 6primary cell
  • 4cell line
  • 4in vitro differentiated cells
Organ
  • 9pancreas
  • 8epithelium
  • 6musculature of body
  • blood vessel
  • 5vasculature
  • 4limb
  • 4liver
  • 3brain
  • 3heart
  • 2vein
  • 1connective tissue
  • 1kidney
Project
  • 25AMP
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 22hg19
  • 2GRCh38
Lab
  • 21AMP-T2D consortium
  • 3Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 1ITG
  • 1Katalin Susztak, Upenn
Audit category:
  • 5inconsistent ontology term
  • 3audit script error
Audit category:
  • 1inconsistent assembly
organ_slims!
  • blood vessel
BIOSAMPLE
ASSAY

29 results

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Clear Filters
Hi-C
tissue
gastrocnemius medialis4
islet of Langerhans3
psoas muscle2
heart1
heart left ventricle1
primary cell
astrocyte of the cerebellum1
brain pericyte1
chondrocytes1
pancreatic acinar cell1
pancreatic alpha cell1
cell line
HepG22
EndoC_BH11
Panc11
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
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