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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 30Hi-C
Assay category
  • 1725Transcription
  • 1319DNA binding
  • 803DNA accessibility
  • 90DNA methylation
  • 303D chromatin structure
Date released
  • 9March, 2020
  • 7July, 2019
  • 5October, 2019
  • 3October, 2022
  • 2August, 2021
  • 2November, 2019
  • 1March, 2019
  • 1March, 2023
Available data
  • 21hic
  • 18bedpe bed3+
  • 4bed bed3+
  • 4bigWig
  • 4hdf5
  • 3cool
  • 1bedpe
Organism
  • 30Homo sapiens
Biosample type
  • 15tissue
  • 9primary cell
  • 4in vitro differentiated cells
  • 2cell line
Organ
  • 9pancreas
  • 8epithelium
  • 6musculature of body
  • 5blood vessel
  • 5vasculature
  • 4limb
  • liver
  • 3brain
  • 3heart
  • 2vein
  • 1connective tissue
  • 1kidney
Project
  • 26AMP
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 24hg19
  • 2GRCh38
Lab
  • 23AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
  • 2Bing Ren, UCSD
  • 1ITG
  • 1Katalin Susztak, Upenn
Audit category:
  • 5inconsistent ontology term
  • 4audit script error
Audit category:
  • 1inconsistent assembly
organ_slims!
  • liver
BIOSAMPLE
ASSAY

30 results

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Clear Filters
Hi-C
tissue
gastrocnemius medialis4
islet of Langerhans3
psoas muscle2
aorta1
heart1
primary cell
endothelial cell of umbilical vein2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
chondrocytes1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
cell line
EndoC_BH11
Panc11
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