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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 25Hi-C
Assay category
  • 1653DNA binding
  • 1439Transcription
  • 659DNA accessibility
  • 44DNA methylation
  • 253D chromatin structure
  • 1DNA sequencing
Date released
  • 9March, 2020
  • 8July, 2019
  • 4October, 2019
  • 2August, 2021
  • 1December, 2018
  • 1March, 2023
Available data
  • 16hic
  • 13bedpe bed3+
  • 4bed bed3+
  • 4bigWig
  • 4hdf5
  • 1fastq
Organism
  • 25Homo sapiens
Biosample type
  • 12tissue
  • 7primary cell
  • 4in vitro differentiated cells
  • 2cell line
Organ
  • pancreas
  • 8epithelium
  • 6musculature of body
  • 5blood vessel
  • 5vasculature
  • 4limb
  • 4liver
  • 3brain
  • 3heart
  • 2vein
  • 1connective tissue
  • 1kidney
Project
  • 24AMP
  • 1ITG
Genome assembly (visualization)
  • 19hg19
  • 1GRCh38
Lab
  • 22AMP-T2D consortium
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Katalin Susztak, Upenn
Audit category:
  • 4inconsistent ontology term
  • 1audit script error
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

25 results

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Clear Filters
Hi-C
tissue
gastrocnemius medialis4
psoas muscle2
aorta1
heart1
heart left ventricle1
primary cell
endothelial cell of umbilical vein2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
chondrocytes1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
cell line
HepG22
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