Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 25Hi-C
Assay category
  • 1690DNA binding
  • 1628Transcription
  • 692DNA accessibility
  • 96DNA methylation
  • 253D chromatin structure
  • 1DNA sequencing
Date released
  • 8July, 2019
  • 8March, 2020
  • 4October, 2019
  • 2August, 2021
  • 2November, 2019
  • 1December, 2018
Available data
  • 15hic
  • 13bedpe bed3+
  • 5bed bed3+
  • 5bigWig
  • 5hdf5
  • 1fastq
Organism
  • 25Homo sapiens
Biosample type
  • 12tissue
  • 5primary cell
  • 4cell line
  • 4in vitro differentiated cells
Organ
  • 6musculature of body
  • 4blood vessel
  • 4epithelium
  • 4limb
  • 4liver
  • 4vasculature
  • 3brain
  • 3pancreas
  • 2heart
  • 1connective tissue
  • 1kidney
  • 1vein
Project
  • 25AMP
Genome assembly (visualization)
  • 20hg19
  • 1GRCh38
Lab
  • 23AMP-T2D consortium
  • 1Bing Ren, UCSD
  • 1Katalin Susztak, Upenn
Audit category:
  • 5inconsistent ontology term
  • 1audit script error
Audit category:
  • 1inconsistent assembly
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

25 results

search-icontable-tab-icon
Clear Filters
Hi-C
tissue
gastrocnemius medialis4
psoas muscle2
aorta1
heart left ventricle1
heart right ventricle1
primary cell
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
endothelial cell of hepatic sinusoid1
endothelial cell of umbilical vein1
cell line
HepG22
EndoC_BH11
Panc11
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego